PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_47432.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 114aa    MW: 12257.7 Da    PI: 9.4686
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_47432.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.5e-091161126
                             GTS--TTTTT-SS-SS CS
                  zf-CCCH 11 rtGtCkyGdrCkFaHg 26
                             rtG+Ck+G++CkF+H+
  Rsa1.0_47432.1_g00001.1  1 RTGQCKFGSTCKFHHP 16
                             8**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF006421.5E-6116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.46118IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
RTGQCKFGST CKFHHPVPPG DHQAPSQHPL PTSPPAIYPS QQFGVVVPRP YVTYSQMVLS  60
PGMVGWNPYQ PSTGTQPSPV YGTKPLSPSA PAYQSGSPSS NKEQSFPQRP GQPE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013682091.19e-46PREDICTED: zinc finger CCCH domain-containing protein 58-like
RefseqXP_013730210.19e-46PREDICTED: zinc finger CCCH domain-containing protein 58-like
SwissprotQ6NPN31e-32C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A078C1Q18e-44A0A078C1Q1_BRANA; BnaC03g09090D protein
TrEMBLA0A078DJ129e-44A0A078DJ12_BRANA; BnaA03g07170D protein
TrEMBLA0A0D3B1T98e-44A0A0D3B1T9_BRAOL; Uncharacterized protein
STRINGBra006465.1-P1e-39(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.16e-34C3H family protein